latest

Installation and Setup

Quick Start Guide
Optimization Solvers
Using MASSpy with Docker
Advanced Docker Usage

Step-by-Step Tutorials

1. Getting Started with MASSpy
2. Constructing Models
3. Reading and Writing Models
4. Dynamic Simulation of Models
5. Plotting and Visualization
6. Enzyme Modules
7. Thermodynamic Feasibility and Sampling of Metabolite Concentrations
8. Ensemble Modeling
9. Network Visualization
10. Checking Model Quality
11. Global Configuration
12. Using COBRApy with MASSpy
13. Modeling Volumes and Multiple Compartments
14. Import and Export of Optimization Problems

Gallery

Visualization
Workflows

Educational Resources

Systems Biology: Simulation of Dynamic Network States

API

API Reference
- mass
  - Subpackages
  - Submodules

Additional Resources:

Frequently Asked Questions (FAQs)
Code Repositories
Works Cited

MASSpy

API Reference
mass
mass.io
Edit on GitHub

`mass.io`

Submodules

mass.io.dict
mass.io.json
mass.io.sbml

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