Code Repositories

This page contains the links to various code and container repositories associated with MASSpy.

MASSpy Repositories

• Links to repositories for the MASSpy package: GitHub | DockerHub

• Links to repositories for the MASSpy publication: GitHub

MASSpy models

A variety of models, including those seen throughout the documentation, are found here

COBRA Repositories

Links to repositories for COnstraint-Based Reconstruction and Analysis (COBRA) packages compatible with MASSpy:

• openCOBRA: Homepage

• COBRApy: Homepage | GitHub | Documentation

• Escher: Homepage | GitHub | Documentation

• Optlang: GitHub | Documentation

Scientific computing in MASSpy

Several packages for scientific computing are utilized within the MASSpy framework are commonly used in conjuction with MASSpy to implement a variety of workflows. Many of these packages are seen throughout the documentation, including those used to build the documentation for MASSpy!

As a helpful reference, links to the documentation homepages are provided for a select set of software:

• NumPy

• SciPy library

• Matplotlib

• pandas

• SymPy

• libRoadRunner

• iPython (Jupyter)

• Docker