MASSpy
v0.1.1

Installation and Setup

  • Quick Start Guide
  • Optimization Solvers
  • Using MASSpy with Docker
  • Advanced Docker Usage

Step-by-Step Tutorials

  • 1. Getting Started with MASSpy
  • 2. Constructing Models
  • 3. Reading and Writing Models
  • 4. Dynamic Simulation of Models
  • 5. Plotting and Visualization
  • 6. Enzyme Modules
  • 7. Thermodynamic Feasibility and Sampling of Metabolite Concentrations
  • 8. Ensemble Modeling
  • 9. Network Visualization
  • 10. Checking Model Quality
  • 11. Global Configuration
  • 12. Using COBRApy with MASSpy
  • 13. Modeling Volumes and Multiple Compartments
  • 14. Import and Export of Optimization Problems

Gallery

  • Visualization
  • Workflows

Educational Resources

  • Systems Biology: Simulation of Dynamic Network States

API

  • API Reference
    • mass
      • Subpackages
        • mass.core
        • mass.enzyme_modules
        • mass.io
        • mass.simulation
        • mass.test
        • mass.thermo
        • mass.util
        • mass.visualization
      • Submodules

Additional Resources:

  • Frequently Asked Questions (FAQs)
  • Code Repositories
  • Works Cited
MASSpy
  • Docs »
  • API Reference »
  • mass »
  • mass.thermo
  • Edit on GitHub

mass.thermo¶

Subpackages¶

  • mass.thermo.conc_sampling
    • mass.thermo.conc_sampling.conc_achr
    • mass.thermo.conc_sampling.conc_hr_sampler
    • mass.thermo.conc_sampling.conc_optgp
    • mass.thermo.conc_sampling.conc_sampling

Submodules¶

  • mass.thermo.conc_solution
  • mass.thermo.conc_solver
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© Copyright 2019, Z. Haiman Revision 3ddbbd0c.

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