Systems Biology: Simulation of Dynamic Network States

Bernhard Ø. Palsson. Systems Biology: Simulation of Dynamic Network States. Cambridge University Press, 2011. doi:10.1017/CBO9780511736179. Citation: [Pal11]

Textbook Chapters:

• 1. Introduction
• 2. Basic Concepts
• 3. Dynamic Simulation: The Basic Procedure
• 4. Chemical Reactions
• 5. Enzyme Kinetics
• 6. Open Systems
• 7. Orders of Magnitude
• 8. Stoichiometric Structure
• 9. Regulation as Elementary Phenomena
• 10. Glycolysis
• 11. Coupling Pathways
• 12. Building Networks
• 13. Hemoglobin
• 14. Regulated Enzymes

Model Construction:

• Glycolysis Model Construction
• Pentose Phosphate Pathway Model Construction
• AMP Salvage Network Model Construction
• Hemoglobin Model Construction
• Phosphofructokinase (PFK) Model Construction