Code Repositories
This page contains the links to various code and container repositories associated with MASSpy.
MASSpy Repositories
Links to repositories for the MASSpy package: GitHub | DockerHub
Links to repositories for the MASSpy publication: GitHub
MASSpy models
A variety of models, including those seen throughout the documentation, are found here
COBRA Repositories
Links to repositories for COnstraint-Based Reconstruction and Analysis (COBRA) packages compatible with MASSpy:
openCOBRA: Homepage
COBRApy: Homepage | GitHub | Documentation
Escher: Homepage | GitHub | Documentation
Optlang: GitHub | Documentation
Scientific computing in MASSpy
Several packages for scientific computing are utilized within the MASSpy framework are commonly used in conjuction with MASSpy to implement a variety of workflows. Many of these packages are seen throughout the documentation, including those used to build the documentation for MASSpy!
As a helpful reference, links to the documentation homepages are provided for a select set of software: